LncRNA Information
ID EL3097 Name RN7SK Aliases 7SK
Species Homo sapiens Chromosome 6 Start site 52995620
End site 52995951 Chain plus Exon NO. 1
Assembly GRCh38.p13 Class lncRNA NCBI accession NR_001445
Ensembl ENSG00000202198 Sequence NR_001445 Peptide-related N/A
CircRNA N/A Exosomal N/A Structure yes


Structure information
Structure view PDB ID
Tradeaux 5KNW
Tradeaux 6D12


Disease
Disease Drug/chemo/stress Method Sample Expression pattern Dysfunction type Description PMID
AIDS N/A N/A N/A expression HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNP. 20471949
AIDS N/A N/A N/A expression Tat efficiently replaces HEXIM1 on the 7SK snRNA in vivo and therefore, it promotes the disassembly of the 7SK/HEXIM/P-TEFb negative transcriptional regulatory snRNP to augment the nuclear level of active P-TEFb. The human 7SK snRNA carries a TAR RNA-like Tat-binding element that is essential for the normal transcriptional regulatory function of 7SK questions the viability of HIV therapeutic approaches based on small drugs blocking the Tat-binding site of HIV TAR. 20976203
AIDS N/A N/A N/A expression The 7SK-HMGA1 interaction not only adds an essential facet to the comprehension of transcriptional plasticity at the coupling of initiation and elongation, but also might provide a molecular link between HIV reprogramming of cellular gene expression-associated oncogenesis. 21087998
AIDS N/A N/A N/A expression Stable expression of cdNIPP1 increased CDK9 phosphorylation on Thr(186) and the association of CDK9 with 7SK RNA. The stable expression of cdNIPP1 disrupted the interaction of Tat and PP1 and inhibited HIV-1 transcription. Expression of cdNIPP1 as a part of the HIV-1 genome inhibited HIV-1 replication. 21098020
AIDS N/A N/A N/A expression The HIV-1 Tat protein also releases P-TEFb from the 7SK/HEXIM complex during viral infection to promote viral transcription and replication. 22377309
cancer N/A N/A N/A expression Together with the HEXIM proteins, 7SK RNA associates with and sequesters a fraction of cellular P-TEFb into a catalytically inactive complex. Active and inactive forms of P-TEFb are kept in a functional and dynamic equilibrium tightly linked to the transcriptional requirement of the cell. Importantly, cardiac hypertrophy and development of various types of human malignancies have been associated with increased P-TEFb activity, consequence of a disruption of this regulatory equilibrium. 22377309
cardiac hypertrophy N/A N/A N/A expression Together with the HEXIM proteins, 7SK RNA associates with and sequesters a fraction of cellular P-TEFb into a catalytically inactive complex. Active and inactive forms of P-TEFb are kept in a functional and dynamic equilibrium tightly linked to the transcriptional requirement of the cell. Importantly, cardiac hypertrophy and development of various types of human malignancies have been associated with increased P-TEFb activity, consequence of a disruption of this regulatory equilibrium. 22377309
gastric cancer N/A N/A N/A expression Transfection of an siRNA directed against LARP7 (anti-LARP7 siRNA) into non-neoplastic gastric epithelial cells decreased 7sk levels by 72% relative to a control siRNA (P<0.01). 22488152


Function (not disease relevant)
Drug/chemo/stress Methods Sample/condition Expression pattern Dysfunction type Description PMID
NMR interaction The xRRM is general to the LARP7 family of proteins and defines the binding site for hLARP7 on the 7SK RNA, providing insight into function. 27679474
differential expression interaction 7SK recognition and assembly of the core 7SK RNP. 29946027
Immunoprecipitation,Immunofluorescence microscopy,FISH, HeLa cell N/A expression N/A 17381310
N/A N/A N/A expression The transcription-dependent interaction of p-tefb with 7sk may therefore contribute to an important feedback loop modulating the activity of rna pol ii. 11713533
N/A N/A N/A expression The 7sk/p-tefb interaction may serve as a principal control point for the induction of cellular and hiv-1 viral gene expression during stress-related responses. 11713532
RNA-seq, qRT-PCR three different brain regions (cortex, white matter, and cerebellum) of human postmortem tissue N/A N/A Thus, these 5 lncRNAs may be applicable as references for accurate normalisation of lncRNA profiling in multiple brain regions during long PMI, enabling the generation of highly reproducible datasets in lncRNA studies of the human brain. 25528156
expression By binding to the HEXIM protein, the complex comprising proteins LARP7 and MePCE captures the positive transcription elongation factor P-TEFb and prevents phosphorylation of pausing factors. 28082395


Interaction
Interaction target Level of interaction Type of interaction Methods Description PMID
hLarp7 RNA-Protein binding N/A The 2.2-Å X-ray crystal structure of the human La-related protein group 7 (hLarp7) xRRM bound to the 7SK stem-loop 4, revealing a unique binding interface. 29946027
xRRM RNA-Protein binding N/A The xRRM binds the 3' end of 7SK RNA at the top of stem-loop 4 (SL4) and interacts with both unpaired and base-paired nucleotides. 27679474
xRRM RNA-Protein binding N/A The 2.2-Å X-ray crystal structure of the human La-related protein group 7 (hLarp7) xRRM bound to the 7SK stem-loop 4, revealing a unique binding interface. 29946027
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