LncRNA Information | ||||||
---|---|---|---|---|---|---|
ID | EL1375 | Name | TU1378 | Aliases | N/A | |
Species | Ganoderma lucidum | Chromosome | N/A | Start site | N/A | |
End site | N/A | Chain | N/A | Exon NO. | N/A | |
Assembly | N/A | Class | lincRNA | NCBI accession | N/A | |
Ensembl | N/A | Sequence | N/A |
Function (not disease relevant) | |||||||||
---|---|---|---|---|---|---|---|---|---|
Methods | Sample/condition | Expression pattern | Dysfunction type | Description | PMID | Source | |||
RNA-seq, qRT-PCR | mycelia stage | up-regulated | N/A | The expression profiles of 5 lincRNAs were negatively correlated with those of their apcGenes (Figure 5B,r<-0.8). The apcGenes of TU718, TU1378, TU3327, and TU5007 are a putative hydrolase (GL15069), a Barwin-related endoglucanase (GL18494), a putative hydrolase (GL27846), and an alphaamylase (GL24914), respectively, which all belong to CAZy family. | 24932683 | PLNlncRbase | |||
Interaction | |||||||||
---|---|---|---|---|---|---|---|---|---|
Interaction target | Level of interaction | Type of interaction | Description | PMID | Source | ||||
GL18494 | RNA-DNA | regulation | In the 16 lincRNA/apcGene pairs that showed significantly positive or negative correlation, 9 apcGenes are involved in wood degradation and 6 apcGenes belong to the CYP450 families, suggesting genes involved in these biological processes be potentially regulated by lincRNAs. | 24932683 | PLNlncRbase | ||||