LncRNA Information
ID EL1299 Name TCONS_00049512 Aliases N/A
Species Populus tomentosa Chromosome N/A Start site N/A
End site N/A Chain N/A Exon NO. N/A
Assembly N/A Class lincRNA NCBI accession N/A
Ensembl N/A Sequence N/A


Function (not disease relevant)
Methods Sample/condition Expression pattern Dysfunction type Description PMID Source
RNA-seq/qRT-PCR wood formation up-regulated N/A In our study, ptc-miR1445 was predicted to target TCONS_00049512, which has been predicted to function in cleaving the transcripts of development-related or stress responsive genes in Populus (Lu et al. 2008). Besides ptc-miR1445, miRNAs that were specifically expressed in xylem and reportedly participate in formation of tension wood (Lu et al. 2005, 2008; Puzey et al. 2012) were predicted to regulate some of the lncRNAs identified in our study. For example, ptr-miR172, which was only suppressed in compression tissue (Lu et al. 2005), may target TCONS_00012272 and TCONS_00012273, which were detected in our study and showed a type C expression pattern (TW 25230698 PLNlncRbase
 


Interaction
Interaction target Level of interaction Type of interaction Description PMID Source
ptc-miR1445 RNA-RNA regulation ptc-miR1445 was predicted to target TCONS_00049512, which has been predicted to function in cleaving the transcripts of development-related or stressresponsive genes in Populus 25230698 PLNlncRbase