LncRNA Information
ID EL1001 Name npc536 Aliases N/A
Species Arabidopsis thaliana Chromosome N/A Start site N/A
End site N/A Chain N/A Exon NO. N/A
Assembly N/A Class antisense NCBI accession HG975425
Ensembl N/A Sequence


Function (not disease relevant)
Methods Sample/condition Expression pattern Dysfunction type Description PMID Source
RT-PCR phosphate starvation, salt up-regulated N/A npc536 was up-regulated in phosphate starvation. overaccumulate npc536 displayed heightened root growth under salt stress conditions. Transformed plants over-expressing npc536 showed heightened root growth under salt stress conditions, with increased primary root growth and secondary root length; No phenotype could be observed in mutants that carry T-DNA insertions within npc536; In response to certain abiotic stresses such as drought or cold treatment, the root expression of these two genes (AT1G67930 and npc536) tends to be anti-correlated (Pearson correlation coefficient of -0.636 and -0.983, respectively). However, accumulation of the AT1G67930 transcript was not significantly modified in plants over-expressing npc536 or in npc536 mutants. (Ben et al., 2009) npc536 has a large dynamic variation of expression across a wide range of tissue and hormonal, biotic, or abiotic treatment. npc536 exists in the antisense strand of a Golgi-transport complex related protein. 35S::npc536 transformants displayed heigh tened root growth under salt stress conditions. (Matsui et al., 2013) 18997003, 24252906 PLNlncRbase
 


Interaction
Interaction target Level of interaction Type of interaction Description PMID Source
AT1G67930 RNA-RNA regulation npc536 regulates the translation of AT1G67930 mRNA. 18997003, 24252906 PLNlncRbase