LncRNA Information | ||||||
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ID | EL0249 | Name | BRCA1 | Aliases | BRCAI; BRCC1; BROVCA1; FANCS; IRIS; PNCA4; PPP1R53; PSCP; RNF53 | |
Species | Homo sapiens | Chromosome | 17 | Start site | 43044295 | |
End site | 43170245 | Chain | minus | Exon NO. | 24 | |
Assembly | Ensembl Release 89 | Class | retained intron | NCBI accession | NR_027676 | |
Ensembl | ENSG00000012048 | Sequence |
Function (not disease relevant) | |||||||||
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Methods | Sample/condition | Expression pattern | Dysfunction type | Description | PMID | Source | |||
knockdown | human fibroblast cells | N/A | expression | Gene expression analysis after RNAi treatment targeted against DDSR1 revealed 119 genes that show differential expression. | 26697398 | ||||
microarray, qRT-PCR | N/A | N/A | interaction | Loss of DDSR1 impairs cell proliferation and DDR signaling and reduces DNA repair capacity by homologous recombination (HR). The HR defect in the absence of DDSR1 is marked by aberrant accumulation of BRCA1 and RAP80 at DSB sites. | 26411689 | ||||
Interaction | |||||||||
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Interaction target | Level of interaction | Type of interaction | Description | PMID | Source | ||||
BRCA1 | RNA-DNA | regulation | In line with a role in regulating HR, DDSR1 interacts with BRCA1 and hnRNPUL1, an RNA-binding protein involved in DNA end resection. | 26411689 | |||||
hnRNPUL1 | RNA-Protein | regulation | In line with a role in regulating HR, DDSR1 interacts with BRCA1 and hnRNPUL1, an RNA-binding protein involved in DNA end resection. | 26411689 | |||||