| LncRNA Information | ||||||
|---|---|---|---|---|---|---|
| ID | EL0574 | Name | Hm629797 | Aliases | Mrhl | |
| Species | Mus musculus | Chromosome | 8 | Start site | 85994245 | |
| End site | 85996642 | Chain | plus | Exon NO. | N/A | |
| Assembly | Ensembl Release 89 | Class | sense intronic | NCBI accession | HM629797 | |
| Ensembl | ENSMUSG00000098439 | Sequence | ||||
| Function (not disease relevant) | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Methods | Sample/condition | Expression pattern | Dysfunction type | Description | PMID | Source | |||
| ChOP (Chromatin oligo affinity precipitation) | mouse spermatogonial Gc1-Spg cells | up-regulated | expression | Our findings in the Gc1-Spg cell line also correlate with the results from analysis of mouse testicular tissue which further highlights the in vivo physiological significance of mrhl RNA in the context of gene regulation during mammalian spermatogenesis. | 25584904 | ||||
| N/A | N/A | N/A | locus | This meiotically active locus happens to be flanked by a transcribed region encoding a non-protein-coding rna polymerase ii transcript and the previously characterized repair site. | 15169920 | ||||
| Interaction | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Interaction target | Level of interaction | Type of interaction | Description | PMID | Source | ||||
| Pc4, hnRNP A/B and hnRNP A2/B1 | RNA-Protein | binding | We also identified interacting proteins of mrhl RNA associated chromatin fraction which included Pc4, a chromatin organizer protein and hnRNP A/B and hnRNP A2/B1 which have been shown to be associated with lincRNA-Cox2 function in gene regulation. | 25584904 | |||||