LncRNA Information
ID EL1000 Name npc531 Aliases N/A
Species Arabidopsis thaliana Chromosome N/A Start site N/A
End site N/A Chain N/A Exon NO. N/A
Assembly N/A Class antisense NCBI accession N/A
Ensembl N/A Sequence N/A


Function (not disease relevant)
Methods Sample/condition Expression pattern Dysfunction type Description PMID Source
qRT-PCR dcl1-9 mutant up-regulated N/A In addition to npcRNAs corresponding to conserved miRNAs, the npc531, which was not previously linked to RNA silencing mechanisms or known to encode a miRNA, also was upregulated in a dcl1-9 mutant, a difference confirmed using quantitative RT-PCR (Fig. 4A, left panel). No known miRNAs map to this gene, suggesting that, alternatively, it could be the target of a miRNA. We identified a putative miR319 target site in npc531 (Fig. 4A, right panel), but 5 RACE-PCR analyses did not reveal any specific cleavage of this transcript in this site (data not shown). 18997003 PLNlncRbase
 


Interaction
Interaction target Level of interaction Type of interaction Description PMID Source
miR319 RNA-RNA regulation We identified a putative miR319 target site in npc531, but 5′ RACE-PCR analyses did not reveal any specific cleavage of this transcript in this site (data not shown) 18997003 PLNlncRbase